Dr. Zhaohua Peng

Dr. Zhaohua  Peng

Title

  • Professor

Contact Information

zp7@msstate.edu
Office: 662-325-0685
2126 Hill Agriculture Bldg.

Overview

Education

  • Ohio State University, The, Doctor of Philosophy (PHD), Plant Biology
  • China Agricultural University, Master of Science (MS), Biophysics
  • China Agricultural University, Bachelor of Science (BS), Biophysics

Research Interests

Plant molecular biology
Plant development
Proteomics

Website

Publications

Year Publications
2021

Wang, Y., Wang, H., Peng, Z. 2021. Rice Diseases Detection and Classification Using Attention Based Neural Network and Bayesian Optimization. Expert Systems with Applications

2021

Zhong, H., Liu, S., Zhao, F., Zhao, Y., Zhou, J., Tang, F., Peng, Z., Li, Y., Xu, S., Wang, C., Yang, G., Li, Z. 2021. Dissecting Tumor Antigens and Immune Subtypes of Gliomato Develop mRNA Vaccine. Frontiers inmmunology 12:1-.

2021

Zhong, H., Liu, S., Sun, T., Kong, W., Deng, X., Peng, Z., Li, Y. 2021. Multi-locus genome-wide association studies for five yield-related traits in rice. BMC Plant Biology 21(364).

2021

Zhong, H., Liu, S., Zhao, G., Zhang, C., Peng, Z., Wang, Z., Yang, J., LI, Y. 2021. Genetic Diversity Relationship Between Grain Quality and Appearance in Rice. Frontiers in Plant Science 12(708996):1-13.

2021

Liu, S., Zhong, H., Wang, Q., Liu, C., Li, T., Peng, Z., LI, Y., Zhang, H., Liao, J., Huang, Y., Wang, Z. 2021. Global Analysis of UDP Glucose Pyrophosphorylase (UDPGP) Gene Family in Plants: Conserved Evolution Involved in Cell Death . Frontiers in Plant Science 12(681719):1-18.

2021

Zhong, H., Liu, S., Meng, x., Sun, T., Deng, Y., Kong, W., Peng, Z., Li, Y. 2021. Uncovering the genetic mechanisms regulating panicle architecture in rice with GPWAS and GWAS. BMC Genomics 22(86):1-13.

2020

Liao, S., Hasan, M. S., Yang, Z., Stevens, A. W., Brett, J. A., Peng, Z. 2020. Feeding arsenic-containing rice bran to growing pigs: Growth performance, arsenic tissue distribution, and arsenic excretion. Int. J. Environ. Res. Public Health 17(22):8530.

2020

Liu, S., Zhong, H., Meng, X., Sun, T., Li, Y., Pinson, S., Chang, K., Peng, Z. 2020. Genome-wide association studies of ionomic and agronomic traits in USDA minicore collection of rice and comparative analyses of different mapping methods . BMC Plant Biology

2019

Meng, X., Mujahid , H., Zhang, Y., Peng, X., Redona, E., wang, c., Peng, Z. 2019. Comprehensive Analysis of the Lysine Succinylome and Protein Co-modifications in Developing Rice Seeds. Mol Cell Proteomics. 18(12):2359-2372.

2018

Meng, X., Lv, Y., Mujahid, H., Edelmann, M. J., Zhao, H., Peng, X., Peng, Z. 2018. Proteome-wide lysine acetylation identification in developing rice (Oryza sativa) seeds and protein co-modification by acetylation, succinylation, ubiquitination, and phosphorylation. Biochimica et biophysica acta. Proteins and proteomics 1866(3):451-463.

2018

Mujahid, H., Meng, X., Xing, S., Peng, X., Wang, C., Peng, Z. 2018. Malonylome analysis in developing rice (Oryza sativa) seeds suggesting that protein lysine malonylation is well-conserved and overlaps with acetylation and succinylation substantially. Journal of proteomics 170:88-98.

2017

Meng, X., Xing, S., Perez, L. M., Peng, X., Zhao, Q., Redona, E., Wang, C., Peng, Z. 2017. Proteome-wide Analysis of Lysine 2-hydroxyisobutyrylation in Developing Rice (Oryza sativa) Seeds. Scientific reports 7(1):17486.

2017

Meng, X., Lv, Y., Mujahid, H., Edelmann, M. J., Zhao, H., Peng, X., Peng, Z. 2017. Proteome-wide lysine acetylation identification in developing Rice (Oryza sativa) seeds and protein co-modification by acetylation, Succinylation, ubiquitination, and phosphorylation. Biochimica et biophysica acta

2016

Xing, S., Meng, X., Zhou, L., Mujahid, H., Zhao, C., Zhang, Y., Wang, C., Peng, Z. 2016. Proteome Profile of Starch Granules Purified from Rice (Oryza sativa) Endosperm. PloS one 11(12):e0168467.

2016

Lv, Y., Liang, Z., Ge, M., Qi, W., Zhang, T., Lin, F., Peng, Z., Zhao, H. 2016. Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize (Zea mays L.). BMC genomics 17:350.

2016

Peng, Z., Liang, Z., Qi, W., Zhang, T., lin, F., Peng, Z., Zhao, H. 2016. Genome-wide identification and functional prediction of nitrogen-responsive intergenic and intronic long non-coding RNAs in maize (Zea mays L.). . BMC Genomics 17:350.

2016

Mujahid, H., Pendarvis, K., Reddy, J. S., Nallamilli, B. R., Reddy, K. R., Nanduri, B. B., Peng, Z. 2016. Comparative Proteomic Analysis of Cotton Fiber Development and Protein Extraction Method Comparison in Late Stage Fibers. Proteomes 4(1).

2016

Mujahid, H., Pendarvis, K., Reddy, J. S., Nallamilli, B. R., Reddy, K. R., Naduri, B., Peng, Z. 2016. Comparative proteomic analysis of cotton fiber development and protein Extraction method comparison in late stage fibers. Protemes 4(7):1-18.

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2014

Nallamilli, B. R., Edelmann, M. J., Zhong, X., Tan, F., Mujahid, H., Zhang, J., Nanduri, B. B., Peng, Z. 2014. Global analysis of lysine acetylation suggests the involvement of protein acetylation in diverse biological processes in rice (Oryza sativa). PloS One 9(2):e89283.

2013

Mujahid, H., Tan, F., Zhang, J., Nallamilli, B. R., Pendarvis, K., Peng, Z. 2013. Nuclear proteome response to cell wall removal in rice (Oryza sativa). Proteome science 11(1):26.

2013

Nallamilli, B. R., Zhang, J., Mujahid, H., Malone, B. M., Bridges, S. M., Peng, Z. 2013. Polycomb group gene OsFIE2 regulates rice (Oryza sativa) seed development and grain filling via a mechanism distinct from Arabidopsis. PLoS Genetics 9(3):e1003322.

2011

Sharma, R., Tan, F., Jung, K. H., Sharma, M. K., Peng, Z., Ronald, P. C. 2011. Transcriptional dynamics during cell wall removal and regeneration reveals key genes involved in cell wall development in rice. Plant molecular biology 77(4-5):391-406.

2011

La , H., Ding, B., Mishra, G. P., Zhou, B., Yang, H., Bellizzi Mdel, R., Chen, S., Meyers, B. C., Peng, Z., Zhu, J. K., Wang, G. 2011. A 5-methylcytosine DNA glycosylase/lyase demethylates the retrotransposon Tos17 and promotes its transposition in rice. Proceedings of the National Academy of Sciences of the United States of America 108(37):15498-503.

2011

Tan, F., Zhang, K., Mujahid, H., Verma, D. P., Peng, Z. 2011. Differential histone modification and protein expression associated with cell wall removal and regeneration in rice (Oryza sativa). Journal of proteome research 10(2):551-63.

2011

Malone, B. M., Tan, F., Bridges, S. M., Peng, Z. 2011. Comparison of four ChIP-Seq analytical algorithms using rice endosperm H3K27 trimethylation profiling data. PloS one 6(9):e25260.

2010

Zhang, J., Nallamilli, B. R., Mujahid, H., Peng, Z. 2010. OsMADS6 plays an essential role in endosperm nutrient accumulation and is subject to epigenetic regulation in rice (Oryza sativa). The Plant Journal 64(4):604-17.

2009

Kakani, A., Li , G., Peng, Z. 2009. Role of AUX1 in the control of organ identity during in vitro organogenesis and in mediating tissue specific auxin and cytokinin interaction in Arabidopsis. Planta 229(3):645-57.

2008

Chitteti, B. R., Tan, F., Mujahid, H., Magee, B. G., Bridges, S. M., Peng, Z. 2008. Comparative analysis of proteome differential regulation during cell dedifferentiation in Arabidopsis. Proteomics 8(20):4303-16.

2008

Li , G., Nallamilli, B. R., Tan, F., Peng, Z. 2008. Removal of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endosperm. Electrophoresis 29(3):604-17.

2007

Tan, F., Li , G., Chitteti, B. R., Peng, Z. 2007. Proteome and phosphoproteome analysis of chromatin associated proteins in rice (Oryza sativa). Proteomics 7(24):4511-27.

2007

Chitteti, B. R., Peng, Z. 2007. Proteome and phosphoproteome differential expression under salinity stress in rice (Oryza sativa) roots. Journal of proteome research 6(5):1718-27.

2007

Chitteti, B. R., Peng, Z. 2007. Proteome and phosphoproteome dynamic change during cell dedifferentiation in Arabidopsis. Proteomics 7(9):1473-500.

2003

Serino, G., Su, H., Peng, Z., Tsuge, T., Wei, N., Gu, H., Deng, X. W. 2003. Characterization of the last subunit of the Arabidopsis COP9 signalosome: implications for the overall structure and origin of the complex. The Plant cell 15(3):719-31.

2001

Peng, Z., Serino, G., Deng, X. W. 2001. A role of Arabidopsis COP9 signalosome in multifaceted developmental processes revealed by the characterization of its subunit 3. Development (Cambridge, England) 128(21):4277-88.

2001

Peng, Z., Serino, G., Deng, X. W. 2001. Molecular characterization of subunit 6 of the COP9 signalosome and its role in multifaceted developmental processes in Arabidopsis. The Plant cell 13(11):2393-407.

2001

Peng, Z., Staub, J. M., Serino, G., Kwok, S. F., Kurepa, J., Bruce, B. D., Vierstra, R. D., Wei, N., Deng, X. W. 2001. The cellular level of PR500, a protein complex related to the 19S regulatory particle of the proteasome, is regulated in response to stresses in plants. Molecular biology of the cell 12(2):383-92.

1996

Peng, Z., Lu, Q., Verma, D. P. 1996. Reciprocal regulation of delta 1-pyrroline-5-carboxylate synthetase and proline dehydrogenase genes controls proline levels during and after osmotic stress in plants. Molecular & general genetics : MGG 253(3):334-41.

1995

Peng, Z., Verma, D. P. 1995. A rice HAL2-like gene encodes a Ca(2+)-sensitive 3'(2'),5'-diphosphonucleoside 3'(2')-phosphohydrolase and complements yeast met22 and Escherichia coli cysQ mutations. The Journal of biological chemistry 270(49):29105-10.

Extension Publications

Year Publications

Graduate Students

  • Shuai Liu

Awards & Honors

  • Best graduate poster winner
    BCH-EPP Research Poster Symposium
  • Fifth Place
    Mississippi Academy of Sciences
  • travel award
    NSF Plant Genome Editing Workshop
  • Exceptional poster presentation award
    Nebraska Plant Breeding Symposium
  • Travel Award
    Nebraska Plant Breeding Symposium
  • Mississippi New Venture Challenge Third Place Award
    Innovate Mississippi

Society Memberships

  • American association of advanced science
  • The protein society